It's highly recommend either SaveFileConverter or Save-Editor to convert saves between various formats!

   Game Title                                                                                           Developer 

Ace Attorney Trilogy
Capcom
Apollo Justice
Capcom
Blaster Master Zero
Inti Creates
Bravely Default
Silicon Studio, Square Enix
Bravely Second: End Layer
Silicon Studio
Captain Toad: Treasure Tracker
Nintendo EPD
Dementium: Remastered
Renegade Kid
Detective Pikachu
The Pokemon Company
Donkey Kong Country Returns 3D
Monster Games
Hey! Pikmin
Arzest
Hyrule Warriors Legends
Koei Tecmo Games
Kid Icarus: Uprising
Project Sora, Sora Ltd.
Kirby: Planet Robobot
HAL Laboratory
Kirby: Triple Deluxe
HAL Laboratory
Legend of Zelda: A Link Between Worlds
Nintendo EAD
Legend of Zelda: Majora's Mask 3D
Nintendo EAD, Grezzo
Legend of Zelda: Ocarina of Time 3D
Nintendo EAD, Grezzo
Legend of Zelda: Tri Force Heroes
Nintendo EPD, Grezzo
Luigi's Mansion
Grezzo
Luigi's Mansion: Dark Moon
Next Level Games, Nintendo SPD
Mario & Luigi: Dream Team
AlphaDream, Good-Feel
Mario & Luigi: Paper Jam
AlphaDream
Mario Golf: World Tour
Camelot Software Planning
Mario Kart 7
Nintendo EAD, Retro Studios
Metroid: Samus Returns
MercurySteam
Mighty Switch Force!
WayForward Technologies
Mighty Switch Force! 2
WayForward Technologies
New Super Mario Bros. 2
Nintendo EAD
Paper Mario: Sticker Star
Nintendo, Intelligent Systems, Vanpool
Poochy & Yoshi's Woolly World
Good-Feel
Resident Evil: The Mercenaries 3D
Capcom, Tose
Rhythm Heaven Megamix
Nintendo SPD
River City: Tokyo Rumble
Natsume
Shovel Knight
Yacht Club Games
Star Fox 64 3D
Nintendo EAD, Q-Games
Super Mario 3D Land
Nintendo EAD
Super Smash Bros. 3DS
Sora Ltd., Bandai Namco Games
Team Kirby Clash Deluxe
Nintendo
Ultimate NES Remix
Nintendo
WarioWare: Gold
Nintendo
Yoshi's New Island
Nintendo